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Commit 1c4e4ebb authored by Doorn, Nina (UT-TNW)'s avatar Doorn, Nina (UT-TNW)
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corrected saving location error

parent db13e96d
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...@@ -2,21 +2,23 @@ import pickle ...@@ -2,21 +2,23 @@ import pickle
import scipy.io as sio import scipy.io as sio
from brian2 import * from brian2 import *
#specify where the images must be saved # specify where the images must be saved
outputdir = '/home/yourdir' outputdir = '../Figures/'
def rasterplot(APs, savetitle, dt, start, stop, color): def rasterplot(APs, savetitle, dt, start, stop, color):
figure(figsize=(8.5, 2.2), dpi=300) figure(figsize=(8.5, 2.2), dpi=300)
plt.plot(APs[:, 1] * dt, APs[:, 0], '|', markeredgecolor=color, ms=9, alpha=.3) plt.plot(APs[:, 1] * dt, APs[:, 0], '|', markeredgecolor=color, ms=9, alpha=.3)
plt.hlines([-0.3, 0.7, 1.7, 2.7, 3.7, 4.7, 5.7, 6.7, 7.7, 8.7, 9.7, 10.7], -3, stop / second + 1300, colors='black', plt.hlines([-0.3, 0.7, 1.7, 2.7, 3.7, 4.7, 5.7, 6.7, 7.7, 8.7, 9.7, 10.7], -3, stop / second + 1300,
linewidths=0.7) colors='black', linewidths=0.7)
xlim([start/second, stop/second]) xlim([start/second, stop/second])
axis("off") axis("off")
tight_layout() tight_layout()
savefig(outputdir + savetitle + '.png', dpi=300, bbox_inches='tight') savefig(outputdir + savetitle + '.png', dpi=300, bbox_inches='tight')
show() show()
def Marginaldiffplot(samples1, samples2, numparams, priorlimits, parlabels, savetitle):
def marginaldiffplot(samples1, samples2, numparams, priorlimits, parlabels, savetitle):
for ind in range(numparams): for ind in range(numparams):
fig, ax = plt.subplots(1, 1, figsize=(1.7, 1.7), dpi=300) fig, ax = plt.subplots(1, 1, figsize=(1.7, 1.7), dpi=300)
vals, xvals = np.histogram(samples1[:, ind], bins=30) vals, xvals = np.histogram(samples1[:, ind], bins=30)
...@@ -28,6 +30,6 @@ def Marginaldiffplot(samples1, samples2, numparams, priorlimits, parlabels, save ...@@ -28,6 +30,6 @@ def Marginaldiffplot(samples1, samples2, numparams, priorlimits, parlabels, save
ax.set_xlabel(parlabels[ind]) ax.set_xlabel(parlabels[ind])
ax.spines[['right', 'top']].set_visible(False) ax.spines[['right', 'top']].set_visible(False)
tight_layout() tight_layout()
plt.savefig(savetitle + parlabels[ind] + '.png', dpi=400, format='png', plt.savefig(outputdir + savetitle + parlabels[ind] + '.png', dpi=400, format='png',
bbox_inches="tight", transparent=True) bbox_inches="tight", transparent=True)
plt.show() plt.show()
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